Big Libel Gig

February 17th, 2010 by cass

Just bought tickets for this.
Dara Ó Briain, Tim Minchin, Marcus Brigstocke, Robin Ince, Ed Byrne, Shappi Khorsandi, Professor Brian Cox, Simon Singh, Professor Richard Wiseman, Dr Peter Wilmshurst and Dr Ben Goldacre at the Palace Theatre, Sunday 14 March 2010 in aid of the Coalition for Libel Reform.

ssh SOCKS proxy

February 3rd, 2010 by cass

Useful fact I didn’t know until today. Do this:

ssh -D8008 me@my.ssh.server.at.work

And you’ll get a SOCKS proxy on localhost:8008. Then you can just tell Firefox (or whatever) to use it and all your web requests will go through your server, giving you access to journal articles etc.

IoP Collaboration graph with R igraph

January 20th, 2010 by cass

My boss asked me to make a nice slide for a presentation showing the collaborations between researchers at our institute. I have a mountain of other work to do, so in the name of procrastination I spent the afternoon playing with the igraph R library:

click for big image

Code

Proudly maintained…

January 18th, 2010 by cass

Heh…

ChIPpeaksAnno

January 14th, 2010 by cass

ChIPpeaksAnnot is a Bioconductor package, built on top of all the Biostrings, BSGenome, IRanges stuff, that will let you annotate peaks with nearby features. Some features (eg. mouse and human TSS positions for current genomes) are made available as data with the package, but it also speaks biomaRt to fetch other features if you need [...]

Adobe Air always using Firefox instead of default browser

November 26th, 2009 by cass

Even though I’ve got my default browser set to Chromium on Ubuntu, Adobe Air programs (well, TweetDeck, which is the only one I use) is insisting on using Firefox. Ignore recommendations to manually edit the hard-coded “firefox” in /opt/Adobe\ AIR/Versions/1.0/libCore.so. It’s fixed in the Air 2.0 beta

IgNoble Awards 2009

October 2nd, 2009 by admin

Check out Improbable Research for this year’s winners.

London BioGeeks TechMeet

October 1st, 2009 by admin

Slides from the inaugural Biogeeks tech meet can be found here

BarCampLondon7 is Official! « BarCampLondon

September 17th, 2009 by cass

BarCampLondon7 is Official! « BarCampLondon.

Euro Bioconductor Dev Meeting

September 17th, 2009 by cass

Announcement from the Bioconductor Mailing List